Can flash column chromatography be green? Part 2

Applying green chemistry principals to flash purification is becoming increasingly important.  In this post, I discuss ways to make flash column chromatography greener by reducing solvent use through optimization of gradient shape.

This is a follow-on to my earlier post where I presented some greener alternatives to DCM as a solvent in flash column chromatography.

Consider for a moment that, a single compound in a reaction mix is most commonly the target for purification and isolation. While this is true, most commercially available flash chromatography systems apply a broad range gradient.  This approach simplifies set up of a gradient at the cost of using solvent to unnecessarily purify undesirable, non-target compounds.  The thinking is that  it is simpler to just run a 0-100% gradient without knowing where that single, valuable, targeted molecule will elute.  Then perform some post-separation analysis with TLC or LC-MS to find the compound among the collected fractions.

The reality is that while these default methods will usually elute the compounds in the defined gradient volume or time, they can either elute compounds too quickly with poor separation or not fully elute all of the compounds in the reaction mix. In both cases excessive solvent use likely.  Figure 1 shows a separation of a 5 component mixture where fully 45% of the solvent used was wasted by a gradient that is too steep to separate the compounds successfully.

This generic 0-100% ethyl acetate in hexane gradient elutes all of the compounds but the separation quality is poor. This sample size is 1% of the media mass.
Figure 1. This inefficient, generic 0-100% gradient elutes all of the mixture’s compounds but the separation quality is poor. Fraction purity is low, except for peak 1, and the amount of solvent not used in the separation (used after the last peak) is considerable (~45% of the total volume!). Very wasteful.

As a chemist, you know that every compound you synthesize is valuable and unique (otherwise you would buy it) so why would you leave its purification to chance with a wasteful, inefficient gradient?

Personally, I do not believe guesswork and assumption is good practice in terms of chromatography so I always use TLC to guide my purification method creation, something I discussed in previous posts.

While many flash chromatography manufactures do have TLC to gradient features built into their systems, these too can often consume more solvent than necessary to elute and separate the reaction mixture components, Figure 2.

Linear gradient results created from TLC data at 100 mg sample load
Figure 2. Linear gradient results created from TLC data are much more efficient than default 0-100% gradients.  In this case, 100 mg of the same mix is fully separated on a 10 gram silica cartridge.  This gradient also used 13 column volumes (CV) or 195 mL, the same volume as the default gradient.  However, even this linear gradient wastes some solvent, 3 CV (45 mL), after the last peak eluted.

The “non-productive” solvent volume that elutes after the last compound is relatively inconsequential for an individual, small-scale run but most of us are performing several purifications per week throughout the year; this all adds up to a lot of consumed solvent that needs disposal and that reality does put a burden on the environment as most of the solvents are burned.

So then, how do you make your flash chromatography methods more efficient in terms of solvent and therefore greener without sacrificing fraction purity?  Well, I recommend flash method optimization with some tips described below.

Method optimization using a step gradient

The classic approach to flash column chromatography is for a chemist to prepare a silica filled glass column, load the mixture to be purified onto the top of the column, begin the separation with a non- or low-polarity solvent blend (hexane/ethyl acetate).  Once the early eluting compounds are collected, the chemist increases the polarity of the solvent blend to elute the more retained compounds.  This process is repeated in a step-wise manner until all compounds are eluted.

This labor intensive approach, can be mimicked by using a predicted  step gradient but without the need to attend to the separation.  Step gradients can easily be created to optimize the separation of each compound in a mixture.  They typically use a minimal amount of solvent, provide maximum load, and reduce run time – a purification trifecta, if you will. I previously discussed this approach which, when using a Biotage Isolera™ Spektra system, requires only two TLC plates’ data.

The TLC to step gradient algorithm used by Biotage optimizes the separation method by balancing three competing goals…

  1. Separate each compound as well as possible based on the your TLC data (up to six compounds and their Rf values are permitted)
  2. Use a minimal amount of solvent to separate and elute all of the compounds entered
  3. Maximize sample loading

An example of an efficient step gradient based on data from just two TLC runs, one in 10% EtOAc and the other in 30% EtOAc is shown in Figure 3. The resulting chromatogram shows that each compound is fully resolved on a 10 gram Biotage® SNAP KP-Sil cartridge. Each compound elutes within about 2 CV at each gradient step which minimizes the amount of solvent used. The entire run is accomplished in only 11 CV with minimal “wasted” solvent. I also want to let you know that this step gradient provided twice the sample load of the linear gradient – 200 mg vs. 100 mg – which is also green because of the potential to reduce cartridge size and therefore solvent consumption.

Excellent step gradients can also be developed from TLC data
Figure 3. This TLC-based step gradient completely separated all five components in just 165 mL using an identical 10 gram silica cartridge at a load of 200 mg.  This much more efficient step gradient reduced solvent consumption by 35 mL versus the linear gradient and provided twice the sample load! Very efficient and greener.

Another good approach to reduce solvent use (and purification time) is to convert a linear gradient, which has separated your target product well from its impurities, to a step gradient also focused on your product. This technique targets a single compound in the mix and anything eluting before your product will be separated from it while compounds more retained either elute later or may even stay on the column. This approach is very effective when scaling up a purification, Figure 4.

As the data below show, the linear gradient fully separated each compound in a 221 mL gradient (a 10 gram Biotage® SNAP Ultra cartridge was used). The purification was scaled-up 2.5x to a 25 gram SNAP Ultra cartridge.  If I performed a direct scale-up on the 25 gram cartridge with a linear gradient the method would consume 585 mL. Instead, I made use of the system’s gradient optimization capabilities and transformed the linear gradient into a step gradient.  The step gradient with the 25 gram cartridge consumed only 291 mL, 50% less than the linear gradient would have and it fully separated the target compound (peak 4) with the 2.5x larger load.

converting a linear to step gradient saves solvent, especially when scaling up
Figure 4.  By converting a linear gradient (top) to a step gradient (bottom) targeted around one specific compound you can reduce the amount of solvent needed by 50%.  In this example the linear gradient was performed on a 10 gram SNAP Ultra cartridge which separated a 150 mg load and consumed 221 mL of solvent.  Targeting the fourth peak (pink), the purification was scaled-up 2.5x to a 25 gram SNAP Ultra cartridge.  A linear gradient with the same cartridge would have consumed 585 mL but the step gradient consumed only 291 mL, 50% less.

Both of these step gradient approaches, I have found, greatly reduce solvent consumption without sacrificing load or purity, which is extremely useful if  looking to reduce solvent waste and when scaling up or purifying on a large cartridge.

If you implement these gradient optimization steps you will make a major impact on making your lab, and employer, greener than they are today and that’s a good thing!

What steps are you taking to make your lab greener?

 

Published by

Bob Bickler

Technical Specialist, Biotage

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